Synopsis of Xiphophorus gene map, 3/5/2003																	Additional Markers from other  hybrid crosses (not included in Hyb1/5)
LG	Kosambi	No Function	Total Markers in Xiphos	Mapped Markers in H1-5	H001/5 Microsats	H001/5 Isozymes	H001/5 RAPDs	H001/5 Other PCR-Based	H001/5 RFLPs	H001/5 Phenotypic	H001/5 Orphaned Microsats	H001/5 Orphaned RAPDs	H001/5 Orphaned Isozymes	H001/5  RFLP	H001/5 Orphaned Phenotypic	H001/5 Total Orphaned*	Hyb 10 Microsats	Hyb 10 Isozymes	Hyb 10 Other	Hybrid 15 RAPDs	Hybrid 15 Phenotypic	Hybrid 15 Isozymes	Other Crosses Phenotypic	Other Crosses Isozymes	Other Crosses Other
1	101.639	99.8	29	22	7	3	9	1	2	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0
2	109.616	110.8	42	26	3	4	16	1	0	0	0	2	0	0	0	2	7	2	0	3	0	0	2	2	0
3	88.462	90	32	21	6	3	8	2	1	0	0	1	0	0	0	1	3	0	0	5	1	0	0	1	1
4	102.421	88.2	36	22	7	1	8	1	1	0	0	1	2	1	0	4	9	2	0	0	0	0	0	3	0
5	113.553	154.2	47	31	4	2	14	2	1	1	0	7	0	0	0	7	11	1	0	2	0	1	0	1	0
6	90.525	93.9	29	12	2	1	4	0	4	0	0	0	1	0	0	1	11	1	0	0	0	0	0	3	2
7	92.31	119.8	18	13	3	1	8	0	0	0	0	1	0	0	0	1	5	0	0	0	0	0	0	0	0
8	77.581	87.5	23	14	6	1	5	0	0	0	0	1	1	0	0	2	7	0	0	0	0	0	0	1	1
9	89.366	96.2	21	15	7	2	6	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	1
10	175.202	182.5	25	16	7	1	8	0	0	0	0	0	0	0	0	0	5	0	0	2	0	1	0	1	0
11	119.12	112.6	25	17	4	3	8	1	0	0	1	0	0	0	0	1	7	0	0	0	0	0	0	0	1
12	93.958	104.4	33	21	8	2	8	1	1	0	1	0	0	0	0	1	8	0	1	1	0	1	1	0	0
13	101.515	92.9	27	14	5	1	7	0	1	0	0	0	0	0	0	0	8	2	0	0	0	0	0	0	3
14	129.612	126.1	23	14	7	0	5	0	1	0	0	0	0	1	0	1	6	0	0	2	0	1	0	0	0
15	73.195	81.3	16	11	2	1	5	1	0	0	0	1	0	1	0	2	4	0	0	1	0	0	0	0	0
16	68.801	62.5	18	12	5	0	5	0	1	0	0	0	0	1	0	1	6	0	0	0	0	0	0	0	0
17	93.396	114.4	25	15	3	0	6	0	0	0	0	5	1	0	0	6	5	0	0	4	1	0	0	0	0
18	122.4	136.2	35	25	4	0	17	2	0	0	0	2	0	0	0	2	9	0	1	0	0	0	0	0	0
19	77.237	69.5	22	14	5	0	9	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0
20	153.86	108.3	25	18	2	0	14	0	0	0	0	1	0	1	0	2	7	0	0	0	0	0	0	0	0
21	41.617	37.7	17	14	5	0	9	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
22	115.95	118.8	19	12	4	1	6	0	1	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0
23	76.49	87.3	22	15	6	0	6	1	0	0	0	2	0	0	0	2	7	0	0	0	0	0	0	0	0
24	38.766	32.6	31	9	1	0	1	5	0	1	0	0	0	0	1	1	4	1	0	0	0	0	7	0	10
	2346.592	2407.5	640	403	113	27	192	18	14	2	2	24	5	5	1	37	156	9	3	22	2	4	10	12	19
and telomere estimate	139.2	(24 x 2 x cM coverage/2)
Total estimated genome size	2485.792
* orphaned denotes loci that are mapped onto LGs, but their exact positioning is problemmatic, due to sample size issues, genotyping errors etc.
Average LG:	97.7746667	100.3125
cM coverage	5.82280893	5.973945409
1 Using Mapmaker for MacIntosh (Dupont Corporation)
				Kosambi	Recombination			Pseudo linkage?		Unlinked (with n>50, "proper" segregation)
Total map length:				2346.592	2407.5			4 RAPDs		8 RAPDs
Markers:				403	403			3 Microsats		3 Microsats
Average LG:				97.7746667	100.3125			In LG21		1 Isozyme
cM coverage:				5.82280893	5.97394541
				0.755 pg/haploid cell*	0.755 pg/haploid cell*
				830500000	830500000	bp in genome
				334.1	345.0	kb/cM
			* From Tiersch et al 1989